PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G197500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 264aa    MW: 28602 Da    PI: 5.9774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G197500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-053987254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +  + erE+  Rd++N+ f  L  +l  +     + + Ka iL+ +++ +++L
  Brast02G197500.1.p 39 KIHKAEREKHKRDKLNDLFGDLGNMLEAD----RQNNGKACILTDTTRILRDL 87
                        667889********************997....57788888888888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-934107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1135106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1373787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVAMGRGNVS AATVSDGSAE KIVRGPVSDK KCKKKAPRKI HKAEREKHKR DKLNDLFGDL  60
GNMLEADRQN NGKACILTDT TRILRDLLSQ LESLRKENST LQNESHYVAM ERDELQDENS  120
VLRNEILELQ NELAMQVAGN QGWGHGTTTG SPLPVAHAAS TVFPAQQPPS ITGAVFPLQQ  180
LTAIAQSYAA PPRELKLFPD AASVEGLEQS EQQEALNHVA RPQARYPTES ASWPVSLGLP  240
RMEDEQCSSS TTGCSKEASS GTD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557817.10.0PREDICTED: transcription factor bHLH47
TrEMBLI1H5060.0I1H506_BRADI; Uncharacterized protein
STRINGBRADI1G61110.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-26bHLH family protein